Confirmed [Bio-bwa-help] color-space support to be dropped in version 0.6

From: "Heng Li"
Date: 24 Nov 2011 11:38

Thanks for all the replies. I will disable the color-space support in the 0.6.x branch, but leave non-functional source code in the files (though this is not my style). In future, I may re-evaluate the necessity of supporting color-space alignment in the 0.6.x branch. People who use bwa for color-space alignment may continue to use 0.5.10. 0.5.10 is as accurate as 0.6.x. It may be slower but just a little bit.

Thank you all,

Heng